Efficient Way To Partially Read Large Numpy File?
Solution 1:
use numpy.load
as normal, but be sure to specify the mmap_mode
keyword so that the array is kept on disk, and only necessary bits are loaded into memory upon access.
mmap_mode : {None, ‘r+’, ‘r’, ‘w+’, ‘c’}, optional If not None, then memory-map the file, using the given mode (see numpy.memmap for a detailed description of the modes). A memory-mapped array is kept on disk. However, it can be accessed and sliced like any ndarray. Memory mapping is especially useful for accessing small fragments of large files without reading the entire file into memory.
The modes are descirbed in numpy.memmap
:
mode : {‘r+’, ‘r’, ‘w+’, ‘c’}, optional The file is opened in this mode: ‘r’ Open existing file for reading only. ‘r+’ Open existing file for reading and writing. ‘w+’ Create or overwrite existing file for reading and writing. ‘c’ Copy-on-write: assignments affect data in memory, but changes are not saved to disk. The file on disk is read-only.
*be sure to not use 'w+' mode, as it will erase your file's contents.
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